medarc/nanopath-evals

NanoPath evaluation data

This is the immutable data mirror used by NanoPath probe protocol v2. It contains only the exact development records consumed by medarc/nanopath: selected THUNDER training/validation images, prepared development-only slide caches, and the two PathoROB subsets. manifest.json records SHA-256 checksums and binds the snapshot to the checked-in benchmark manifests.

No official THUNDER, HEST, or CPTAC classification test record is included. HEST is absent. CPTAC appears only as the pre-existing CPTAC-PDA overall-survival development probe. PanNuke contains Fold1 and Fold2 only; Fold3 is absent. Tolkach ESCA's TCGA rows are removed. ESCA classification intentionally retains selected TCGA images in the probe's training side, while every scored ESCA validation image is from UKK.

Runtime dataset	Download size
bach	4.54 GiB
bracs	9.78 GiB
break_his	0.63 GiB
crc	0.88 GiB
esca	0.11 GiB
mhist	0.23 GiB
pcam	0.10 GiB
spider_breast	0.37 GiB
spider_colorectal	0.38 GiB
spider_skin	0.58 GiB
spider_thorax	0.40 GiB
wilds	0.14 GiB
pannuke	1.27 GiB
segpath_epithelial	18.68 GiB
segpath_lymphocytes	20.75 GiB
ucla_lung	1.40 GiB
surgen	101.42 GiB
leopard_bcr	15.52 GiB
cptac_pda_os	14.15 GiB
pathorob	0.68 GiB

Total downloadable payload: 192.01 GiB. Classification/segmentation image trees are tarred to keep the Hub repository small; the NanoPath preparation script downloads and extracts them automatically.

The mirror does not relicense upstream datasets. Each component remains governed by its original terms and should be used for research in accordance with those terms. Sources include BACH (Zenodo 3632035), BRACS, BreaKHis, NCT-CRC-HE-100K, ESCA (Zenodo 7548828), MHIST, PCam, SPIDER, CAMELYON17-WILDS, PanNuke, SegPath (Zenodo 7412731 and 7412529), PathoBench/UCLA, SurGen, LEOPARD, CPTAC, and PathoROB. See the NanoPath and THUNDER repositories for citations and split construction.