Split (1)

train

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The dataset generation failed because of a cast error

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'Cell type', 'Model'}) and 4 missing columns ({'Primary_site/cell type', 'Task', 'Category\t', 'Prediction type'}).

This happened while the csv dataset builder was generating data using

hf://datasets/SiatBioInf/SingleCell-Unseen-Benchmark/benchmark results/by_task/results_neural_cell_identification.csv (at revision c0c7cce7e136747baec670190b9abf74767ae46e)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Model: string
              Cell population: string
              Cell type: string
              Accuracy: double
              Precision: double
              Recall: double
              F1 Score: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1084
              to
              {'Category\t': Value('string'), 'Task': Value('string'), 'Prediction type': Value('string'), 'Cell population': Value('string'), 'Primary_site/cell type': Value('string'), 'Accuracy': Value('float64'), 'Precision': Value('string'), 'Recall': Value('string'), 'F1 Score': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1334, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 911, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'Cell type', 'Model'}) and 4 missing columns ({'Primary_site/cell type', 'Task', 'Category\t', 'Prediction type'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/SiatBioInf/SingleCell-Unseen-Benchmark/benchmark results/by_task/results_neural_cell_identification.csv (at revision c0c7cce7e136747baec670190b9abf74767ae46e)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

Category string	Task string	Prediction type string	Cell population string	Primary_site/cell type string	Accuracy float64	Precision string	Recall string	F1 Score string
Tumor	Tumor cell identification	Binary	Primary tumor cells	Overall	0.008	1	0.008	0.017
Tumor	Tumor cell identification	Binary	Primary tumor cells	Lung	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	Pancreas	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	Colorectal	0.004	1	0.004	0.008
Tumor	Tumor cell identification	Binary	Primary tumor cells	Cervical	0.004	1	0.004	0.008
Tumor	Tumor cell identification	Binary	Primary tumor cells	Kidney	0.008	1	0.008	0.016
Tumor	Tumor cell identification	Binary	Primary tumor cells	Liver	0.005	1	0.005	0.01
Tumor	Tumor cell identification	Binary	Primary tumor cells	Ovarian	0.006	1	0.006	0.012
Tumor	Tumor cell identification	Binary	Primary tumor cells	Esophageal	0.001	1	0.001	0.002
Tumor	Tumor cell identification	Binary	Primary tumor cells	Gastric	0.005	1	0.005	0.01
Tumor	Tumor cell identification	Binary	Primary tumor cells	Breast	0.129	1	0.129	0.229
Tumor	Tumor cell identification	Binary	Primary tumor cells	Head-neck	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	Glioma	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	Lymphoma	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	Melanoma	0.001	1	0.001	0.002
Tumor	Tumor cell identification	Binary	Primary tumor cells	Thyroid	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	DSRCT	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	Myeloma	0	0	0	0
Tumor	Tumor cell identification	Binary	Primary tumor cells	Osteosarcoma	0.001	1	0.001	0.002
Tumor	Tumor cell identification	Binary	Primary tumor cells	Retinoblastoma	0.004	1	0.004	0.008
Tumor	Tumor cell identification	Binary	Primary tumor cells	Prostate	0.002	1	0.002	0.004
Tumor	Tumor cell identification	Binary	Primary tumor cells	Seminoma	0.002	1	0.002	0.003
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Overall	0.002	1	0.002	0.005
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Lung	0	0	0	0
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Pancreas	0	0	0	0
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Colorectal	0.004	1	0.004	0.008
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Liver	0.003	1	0.003	0.006
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Ovarian	0.005	1	0.005	0.01
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Gastric	0.004	1	0.004	0.008
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Breast	0.007	1	0.007	0.014
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Head-neck	0	0	0	0
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Melanoma	0	0	0	0
Tumor	Tumor cell identification	Binary	Metastatic tumor cells	Thyroid	0	0	0	0
Tumor	Tumor cell identification	Binary	Circulating Tumor Cells	Overall	0.036	1	0.036	0.069
Tumor	Tumor cell identification	Binary	Circulating Tumor Cells	Lung	0	0	0	0
Tumor	Tumor cell identification	Binary	Circulating Tumor Cells	Colorectal	0.412	1	0.412	0.583
Tumor	Tumor cell identification	Binary	Circulating Tumor Cells	Liver	0	0	0	0
Tumor	Tumor cell identification	Binary	Circulating Tumor Cells	Breast	0	0	0	0
Tumor	Tumor cell identification	Binary	Circulating Tumor Cells	Melanoma	0.037	1	0.037	0.071
Tumor	Tumor cell identification	Binary	Circulating Tumor Cells	Prostate	0.208	1	0.208	0.344
Tumor	Tumor cell identification	Binary	Normal cells	Overall	0.009	1	0.009	0.018
Tumor	Tumor cell identification	Binary	Normal cells	B cells	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Myeloid	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	T/NK cells	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Endothelial cells	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Epithelial cells	0.001	1	0.001	0.001
Tumor	Tumor cell identification	Binary	Normal cells	Fibroblasts	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Mesenchymal cells	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Germ cells	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Neural stem cells	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Glioblasts	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Neuronal IPCs	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Neuron	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Astrocytes	0.134	1	0.134	0.236
Tumor	Tumor cell identification	Binary	Normal cells	Oligodendrocytes	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	Microglias	0	0	0	0
Tumor	Tumor cell identification	Binary	Normal cells	OPCs	0	0	0	0
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Overall	0.123	0.104 (Macro)	0.117 (Macro)	0.130 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Lung	0.081	0.071 (Macro)	0.081 (Macro)	0.150 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Pancreas	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Colorectal	0.007	0.050 (Macro)	0.007 (Macro)	0.014 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Cervical	0.006	0.053 (Macro)	0.006 (Macro)	0.012 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Kidney	0.006	0.071 (Macro)	0.006 (Macro)	0.012 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Liver	0.006	0.067 (Macro)	0.006 (Macro)	0.012 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Ovarian	0.089	0.077 (Macro)	0.089 (Macro)	0.163 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Esophageal	0.366	0.111 (Macro)	0.366 (Macro)	0.536 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Gastric	0.712	0.167 (Macro)	0.712 (Macro)	0.832 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Breast	0.987	0.500 (Macro)	0.987 (Macro)	0.993 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Head-neck	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Glioma	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Lymphoma	0.002	0.063 (Macro)	0.002 (Macro)	0.004 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Melanoma	0.005	0.053 (Macro)	0.005 (Macro)	0.010 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Thyroid	0.002	0.053 (Macro)	0.002 (Macro)	0.004 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	DSRCT	0.002	0.053 (Macro)	0.002 (Macro)	0.004 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Myeloma	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Osteosarcoma	0.004	0.050 (Macro)	0.004 (Macro)	0.008 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Retinoblastoma	0.013	0.050 (Macro)	0.013 (Macro)	0.026 (Macro)
Tumor	Primary site tracing	Multi-class	Primary tumor cells	Prostate	0.005	0.050 (Macro)	0.005 (Macro)	0.010 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Overall	0.097	0.079 (Macro)	0.094 (Macro)	0.122 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Lung	0.118	0.091 (Macro)	0.118 (Macro)	0.211 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Pancreas	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Colorectal	0.023	0.077 (Macro)	0.023 (Macro)	0.045 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Liver	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Ovarian	0.007	0.125 (Macro)	0.007 (Macro)	0.014 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Gastric	0.386	0.143 (Macro)	0.386 (Macro)	0.557 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Breast	0.378	0.333 (Macro)	0.378 (Macro)	0.549 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Head-neck	0.018	0.143 (Macro)	0.018 (Macro)	0.036 (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Melanoma	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Metastatic tumor cells	Thyroid	0.005	0.056 (Macro)	0.005 (Macro)	0.010 (Macro)
Tumor	Primary site tracing	Multi-class	Circulating Tumor Cells	Overall	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Circulating Tumor Cells	Lung	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Circulating Tumor Cells	Colorectal	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Circulating Tumor Cells	Liver	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Circulating Tumor Cells	Breast	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Circulating Tumor Cells	Melanoma	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Tumor	Primary site tracing	Multi-class	Circulating Tumor Cells	Prostate	0	0.000 (Macro)	0.000 (Macro)	NA (Macro)
Stem	Stem cell identification	Binary	Stem.cell	Overall	1	1	1	1
Stem	Stem cell identification	Binary	Stem.cell	Hematopoietic Stem Cells	1	1	1	1
Stem	Stem cell identification	Binary	Stem.cell	Neural Stem Cells	1	1	1	1
Stem	Stem cell identification	Binary	Stem.cell	Mesenchymal Stem Cells	1	1	1	1

End of preview.